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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_11391317_11392845_R

Intron Information:

Intron Rank:
148194
Intron Class:
major
Intron Phase:
Intron Coordinates:
11391317 - 11392845
Intron Length:
1529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
ATTTTCCTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
82
26.1
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
84.2
0.77
0.7
80.6
30.8
Minor 5ss
39.7
-1.2
2.8
45.9
43.7
Minor BPS
70
0.71
1.6
86.76
32.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027056
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026828
11378919 - 11392888
13970