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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113915386_113917377_F

Intron Information:

Intron Rank:
144784
Intron Class:
major
Intron Phase:
Intron Coordinates:
113915386 - 113917377
Intron Length:
1992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCTG
5'SS Class:
major
3'SS Sequence:
TCTTGCTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
GTGACCTCACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.7
44.4
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
76.6
0.6
0.8
69.3
36.9
Minor 5ss
33.7
-1.9
3.5
46.7
48.6
Minor BPS
46.3
-0.2
1.9
63.39
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028039
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041914
113915216 - 113919349
4134