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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113919356_113919970_F

Intron Information:

Intron Rank:
144783
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
113919356 - 113919970
Intron Length:
615

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCGCTTTGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTGCAT
U12 Branch Point Sequence:
TTTTTCTCCTCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
76.8
31.8
Major BPS
62.4
0.31
1.4
73.6
41.8
Major PPT
58
0.18
1.7
69
37.1
Minor 5ss
39.1
-1.2
3
50.2
46.2
Minor BPS
42.2
-0.5
3.6
79.56
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028039
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018150
113917221 - 113920480
3260