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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_114082117_114082206_F

Intron Information:

Intron Rank:
137714
Intron Class:
major
Intron Phase:
Intron Coordinates:
114082117 - 114082206
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGCAGC
5'SS Class:
major
3'SS Sequence:
GGTGCTTTCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAG
U12 Branch Point Sequence:
ACTCTATGAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
59.8
45.2
Major BPS
55.2
0.13
1.6
60.7
45.9
Major PPT
72.7
0.51
0.9
69
41.8
Minor 5ss
38.5
-1.3
3.2
48.4
42.9
Minor BPS
44.5
-0.3
1.8
61.9
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024162
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030961
114082004 - 114083053
1050