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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_114096142_114099092_F

Intron Information:

Intron Rank:
150232
Intron Class:
major
Intron Phase:
Intron Coordinates:
114096142 - 114099092
Intron Length:
2951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTTAGTAGA
5'SS Class:
major
3'SS Sequence:
TTATTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTCATTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.2
72.9
38.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
93.1
0.97
0.7
92.4
26
Minor 5ss
33.2
-1.9
2.5
35.7
34
Minor BPS
49.8
0.06
1.8
71.17
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030746
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044924
114096105 - 114100205
4101