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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_114271136_114272104_F

Intron Information:

Intron Rank:
140851
Intron Class:
major_hybrid
Intron Phase:
Intron Coordinates:
114271136 - 114272104
Intron Length:
969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
AAAAATGTTTGAG|C
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTATCCTAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
67.7
40.2
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
45.7
-0.2
1.7
47.4
48.6
Minor 5ss
43.4
-0.7
2.9
53
46
Minor BPS
74.8
0.86
1.6
88.75
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025861
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047289
114270223 - 114298408
28186