About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_114533020_114537777_R

Intron Information:

Intron Rank:
136495
Intron Class:
major
Intron Phase:
Intron Coordinates:
114533020 - 114537777
Intron Length:
4758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGGCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTTGGCTTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
86.2
29.2
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
83.5
0.75
0.9
76.5
37.7
Minor 5ss
38.5
-1.3
2.8
49.8
40.3
Minor BPS
46.9
-0.3
2.2
60.06
47.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020860
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040349
114532716 - 114538884
6169