About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_114553155_114561925_R

Intron Information:

Intron Rank:
148823
Intron Class:
major
Intron Phase:
Intron Coordinates:
114553155 - 114561925
Intron Length:
8771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CATTCTTCAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CATTCTTCAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
87.9
29.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
70.3
0.46
0.9
66.5
34
Minor 5ss
45.7
-0.5
2.8
59
45.5
Minor BPS
62.5
0.39
1.5
68.45
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027544
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042095
114552992 - 114566356
13365