Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_114604076_114604436_R

Intron Information:

Intron Rank:

135692

Intron Class:

major

Intron Phase:

Intron Coordinates:

114604076 - 114604436

Intron Length:

361

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGAATT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTCTTCTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATCCAT

U12 Branch Point Sequence:

AGTGCCAAAAGA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.8

86.3

Major BPS

69.5

0.49

1.2

78.7

34.9

Major PPT

91.4

0.93

0.6

85.5

29.2

Minor 5ss

45.5

-0.5

2.9

66.2

44.9

Minor BPS

-0.5

2.2

55.2

43.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020407

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032814

114603869 - 114607713

3845