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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_114604520_114607453_R

Intron Information:

Intron Rank:
135693
Intron Class:
major
Intron Phase:
Intron Coordinates:
114604520 - 114607453
Intron Length:
2934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAGGTGCA
5'SS Class:
major
3'SS Sequence:
ATTTTGAATTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTTTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
68
37.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
70.5
0.46
1
68.3
41.9
Minor 5ss
34
-1.8
3.5
45.1
43.2
Minor BPS
67.3
0.62
1.3
81.06
34.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020407
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032814
114603869 - 114607713
3845