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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_114693978_114699467_R

Intron Information:

Intron Rank:
145744
Intron Class:
major
Intron Phase:
Intron Coordinates:
114693978 - 114699467
Intron Length:
5490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
ATCTGTTGGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.1
37.5
Major BPS
79.4
0.73
1
80.1
32
Major PPT
82.8
0.74
0.7
80.9
24.2
Minor 5ss
25.6
-2.8
3.1
31.9
42.9
Minor BPS
49
-0
1.9
69.56
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025805
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029947
114685956 - 114699895
13940