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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_114779113_114781739_R

Intron Information:

Intron Rank:
143754
Intron Class:
major
Intron Phase:
Intron Coordinates:
114779113 - 114781739
Intron Length:
2627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
ACTCCTTCCAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
ACATTCTGACTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
77.6
32.3
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
63.2
0.3
1
63.1
31.3
Minor 5ss
35.7
-1.6
3.2
45.3
36.6
Minor BPS
47.5
-0.2
1.7
53.69
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024651
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024716
114778924 - 114789562
10639