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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_114789151_114789509_R

Intron Information:

Intron Rank:
143757
Intron Class:
major
Intron Phase:
Intron Coordinates:
114789151 - 114789509
Intron Length:
359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCCCAT
U12 Branch Point Sequence:
CATTCCCCAGCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
80.7
33.8
Major BPS
63.5
0.33
1.2
72.5
34.6
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
35.6
-1.6
2.6
35.6
40.5
Minor BPS
46.6
-0.2
2.1
60.99
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024651
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024716
114778924 - 114789562
10639