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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_114791265_114801769_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
114791265 - 114801769
Intron Length:
10505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCGCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTACATAAAT
Flanking Amino Acid:
ALLLLAALQQAPIKAACEDM
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
41.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
85.1
0.79
0.8
82.2
34.1
Minor 5ss
36.7
-1.5
3.3
47.6
48
Minor BPS
58.9
0.36
1.9
81.29
39.1

Associated Gene:

Gene:
CDH2
Ensembl Gene ID:
ENSAPLG00000004203
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004419
114791190 - 114908796
117607