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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_114801882_114870306_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
114801882 - 114870306
Intron Length:
68425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACTGTTA
5'SS Class:
major
3'SS Sequence:
GTGTGTTTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTGTTCTTCATT
Flanking Amino Acid:
SVHGGQPLLNVRFQSCDGNK
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.7
0.3
1.1
60
41.2
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
79
0.65
1
72.2
42.7
Minor 5ss
39.8
-1.1
3.5
55.4
48.8
Minor BPS
66.4
0.6
1.7
82.85
39.2

Associated Gene:

Gene:
CDH2
Ensembl Gene ID:
ENSAPLG00000004203
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004419
114791190 - 114908796
117607