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Intron Name: Anas_platyrhynchos_platyrhynchos_2_114870534_114872372_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

114870534 - 114872372

Intron Length:

1839

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAACAA

5'SS Class:

strong_major

3'SS Sequence:

GTACCTGGGAAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ATTTTAC

U12 Branch Point Sequence:

ATGTGCTTAATT

Flanking Amino Acid:

EPAFTGATEKDQKKTEEIIF

Intron Amino Acid Position:

139

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

70.2

35.7

Major BPS

77.8

0.69

0.9

69.4

37.3

Major PPT

47.1

-0.1

1.2

43.7

41.4

Minor 5ss

30.6

-2.2

3.1

38.6

46.4

Minor BPS

68.9

0.67

1.7

82.03

Associated Gene:

Gene:

CDH2

Ensembl Gene ID:

ENSAPLG00000004203

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004419

114791190 - 114908796

117607