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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_114872520_114873271_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
114872520 - 114873271
Intron Length:
752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGATACATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
CTCTTTTTGATA
Flanking Amino Acid:
RGPFPQELVRIRSDRDKSLS
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
78.6
37.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
71.1
0.47
0.9
66.4
38.9
Minor 5ss
33.5
-1.9
3.2
40.3
45.6
Minor BPS
60.7
0.33
1.2
64.38
37

Associated Gene:

Gene:
CDH2
Ensembl Gene ID:
ENSAPLG00000004203
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004419
114791190 - 114908796
117607