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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_114876503_114881313_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
114876503 - 114881313
Intron Length:
4811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
TTGTCTAAAACT
Flanking Amino Acid:
ITVAAGLDREKVQQYTLIIQ
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
67.5
39.2
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
82.6
0.73
0.9
81.2
36.5
Minor 5ss
36.2
-1.6
3.2
46.5
48.8
Minor BPS
57.8
0.32
2
80.45
41.7

Associated Gene:

Gene:
CDH2
Ensembl Gene ID:
ENSAPLG00000004203
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004419
114791190 - 114908796
117607