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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_114887598_114887900_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
114887598 - 114887900
Intron Length:
303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAATTAAC
5'SS Class:
major
3'SS Sequence:
ATTTCACCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TCTTCTGTAAAC
Flanking Amino Acid:
KRNWTIVRISGDHAQLSLRI
Intron Amino Acid Position:
665

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
76
33
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
74
0.54
0.8
67.4
33.4
Minor 5ss
36.2
-1.6
2.7
42.7
38.5
Minor BPS
56.1
0.17
2.1
70.99
40.7

Associated Gene:

Gene:
CDH2
Ensembl Gene ID:
ENSAPLG00000004203
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004419
114791190 - 114908796
117607