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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_11488762_11495794_F

Intron Information:

Intron Rank:
147076
Intron Class:
major
Intron Phase:
Intron Coordinates:
11488762 - 11495794
Intron Length:
7033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TATTTCCGTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CTTACTATAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
43.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
74.8
0.56
0.9
69.9
36.3
Minor 5ss
43.2
-0.7
2.9
55.9
48.3
Minor BPS
57.6
0.23
1.6
68.67
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029206
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038043
11488314 - 11497404
9091