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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_114888135_114889859_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
114888135 - 114889859
Intron Length:
1725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TTTTGCCACATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCACAA
U12 Branch Point Sequence:
TTTTTGCCACAT
Flanking Amino Acid:
AILLCIIILLILVLMFVVWM
Intron Amino Acid Position:
743

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.1
39.4
Major BPS
59.7
0.24
1
67
29.8
Major PPT
71.2
0.48
0.9
66.3
34.9
Minor 5ss
37.3
-1.4
2.7
48
41.7
Minor BPS
38.3
-0.8
2.5
65.66
44.7

Associated Gene:

Gene:
CDH2
Ensembl Gene ID:
ENSAPLG00000004203
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004419
114791190 - 114908796
117607