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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_114890000_114900586_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
114890000 - 114900586
Intron Length:
10587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TCATATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
ATTCTCCTAACG
Flanking Amino Acid:
DEEGGGEEDQDYDLSQLQQP
Intron Amino Acid Position:
790

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
85.9
23.9
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
82.2
0.72
0.9
76.7
36.8
Minor 5ss
29.7
-2.3
3
39.4
46.1
Minor BPS
59.6
0.16
1.8
68.01
39.1

Associated Gene:

Gene:
CDH2
Ensembl Gene ID:
ENSAPLG00000004203
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004419
114791190 - 114908796
117607