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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_11495893_11496728_F

Intron Information:

Intron Rank:
147077
Intron Class:
major
Intron Phase:
Intron Coordinates:
11495893 - 11496728
Intron Length:
836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTCATACTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GCAACCTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.2
38.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.9
0.49
0.9
63.3
37.9
Minor 5ss
34
-1.8
2.9
42.9
44
Minor BPS
73.3
0.81
1.3
78.8
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029206
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038043
11488314 - 11497404
9091