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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_115077239_115078028_F

Intron Information:

Intron Rank:
140153
Intron Class:
major
Intron Phase:
Intron Coordinates:
115077239 - 115078028
Intron Length:
790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACATGT
5'SS Class:
major
3'SS Sequence:
AATATCTCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCAAT
U12 Branch Point Sequence:
TTTCCAATATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
72.5
39.9
Major BPS
71.8
0.54
1.2
79
32.5
Major PPT
71.2
0.48
0.9
67.6
39.2
Minor 5ss
45.2
-0.5
3
65.7
45.3
Minor BPS
50
0.08
2.1
80.25
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025376
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048328
115068175 - 115078305
10131