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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_115092845_115103328_R

Intron Information:

Intron Rank:
142816
Intron Class:
major
Intron Phase:
Intron Coordinates:
115092845 - 115103328
Intron Length:
10484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGGGTGCC
5'SS Class:
major
3'SS Sequence:
CATTTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
CATTTCTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
62.7
37.5
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
81.5
0.71
0.8
75.9
32.3
Minor 5ss
26.7
-2.7
3.2
26.6
36.8
Minor BPS
63.2
0.41
1.8
71.72
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024142
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023586
115090415 - 115103477
13063