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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_115145362_115151531_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
115145362 - 115151531
Intron Length:
6170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATTATTATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
CTATTATTATTC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
80.9
34.1
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
80
0.67
0.9
71
43.6
Minor 5ss
59.5
0.32
2.3
76.1
39.5
Minor BPS
48.6
-0.1
1.8
59.59
39.9

Associated Gene:

Gene:
CHST9
Ensembl Gene ID:
ENSAPLG00000018165
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031522
115144779 - 115241409
96631