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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_115260659_115260727_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
115260659 - 115260727
Intron Length:
69

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ATA|GCAACCCTC
5'SS Class:
weak_major
3'SS Sequence:
TTTTCCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TATTGCTTGACT
Flanking Amino Acid:
LEIFPPKPARYKCGRLCKCE
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.8
0.04
1.4
58.2
43.4
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
94
0.99
0.5
92.6
17.2
Minor 5ss
39.5
-1.2
4.2
61
38.9
Minor BPS
72.6
0.79
1.8
88.28
36.8

Associated Gene:

Gene:
AQP4
Ensembl Gene ID:
ENSAPLG00000004032
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004140
115260597 - 115265035
4439