About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_115407563_115418038_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115407563 - 115418038
Intron Length:
10476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
TATCTCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
AGATCATTAACC
Flanking Amino Acid:
TKTPKNPVASDSRPNMSRPL
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
71.7
34.4
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
81.7
0.71
0.8
76.1
32.1
Minor 5ss
42.7
-0.8
2.7
56.3
41.9
Minor BPS
67.4
0.52
1.6
72.43
37.6

Associated Gene:

Gene:
KCTD1
Ensembl Gene ID:
ENSAPLG00000003981
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004078
115407347 - 115452258
44912