About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_115411704_115412463_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
115411704 - 115412463
Intron Length:
760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GATGCGTTACTT
Flanking Amino Acid:
EDVAVKIVPSDPVAPVQPNH
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
88.9
0.88
0.7
84
31
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
46
-0.2
2.3
65.35
45.5

Associated Gene:

Gene:
KCTD1
Ensembl Gene ID:
ENSAPLG00000003981
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034716
115411505 - 115452258
40754