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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_115418218_115449395_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
115418218 - 115449395
Intron Length:
31178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTTA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
CTGACACTAACG
Flanking Amino Acid:
LATLTKYPDSRIGRLFDGTE
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1.1
84.1
30.2
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
82.8
0.74
0.8
73.9
36.7
Minor 5ss
49.3
-0
2.5
67.2
43.9
Minor BPS
46.5
-0.4
2.1
54.19
46.1

Associated Gene:

Gene:
KCTD1
Ensembl Gene ID:
ENSAPLG00000003981
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020177
115391203 - 115455805
64603
ENSAPLT00000004078
115407347 - 115452258
44912
ENSAPLT00000034716
115411505 - 115452258
40754