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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_115449541_115451859_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115449541 - 115451859
Intron Length:
2319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
GCATGTCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TCTTTCTTAATT
Flanking Amino Acid:
SKLLIPDDFKDYSLLYEEAK
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.7
86.7
23
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
73.8
0.54
1
69.4
41.5
Minor 5ss
38.4
-1.3
3.3
55.7
48.5
Minor BPS
83.9
1.14
1
91.07
32.9

Associated Gene:

Gene:
KCTD1
Ensembl Gene ID:
ENSAPLG00000003981
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020177
115391203 - 115455805
64603
ENSAPLT00000004078
115407347 - 115452258
44912
ENSAPLT00000034716
115411505 - 115452258
40754