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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_115452166_115455586_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115452166 - 115455586
Intron Length:
3421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGGT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
ATTTACTTACAC
Flanking Amino Acid:
NGYCHLNSVQVLERLQQRGF
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
69.9
41.1
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
87.9
0.85
0.7
83.3
25
Minor 5ss
30.8
-2.2
3.7
47.1
48.3
Minor BPS
56.3
0.18
1.9
71.36
39.3

Associated Gene:

Gene:
KCTD1
Ensembl Gene ID:
ENSAPLG00000003981
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020177
115391203 - 115455805
64603