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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_115478325_115479603_R

Intron Information:

Intron Rank:
134530
Intron Class:
major
Intron Phase:
Intron Coordinates:
115478325 - 115479603
Intron Length:
1279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGCATC
5'SS Class:
major
3'SS Sequence:
TTTCCTTCCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAG
U12 Branch Point Sequence:
CTTTCTTTAGGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.2
36.4
Major BPS
59.9
0.25
1.6
59.6
46.8
Major PPT
80.5
0.69
0.7
76.6
25.5
Minor 5ss
46.4
-0.4
2.9
65.7
38.6
Minor BPS
57.3
0.21
1.9
69.6
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019684
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041981
115478323 - 115481009
2687