About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_115496193_115508637_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115496193 - 115508637
Intron Length:
12445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTAAACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTTTTTAAACT
Flanking Amino Acid:
EREMLLRAAKMQQLELAQMQ
Intron Amino Acid Position:
919

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
69.3
0.44
1
64.6
40.4
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
67.3
0.62
1.6
82.56
39.6

Associated Gene:

Gene:
TAF4B
Ensembl Gene ID:
ENSAPLG00000003724
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020631
115483663 - 115553709
70047