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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_115507611_115508637_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115507611 - 115508637
Intron Length:
1027

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTTGGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAA
U12 Branch Point Sequence:
TTCTGTTCAATC
Flanking Amino Acid:
EREMLLRAAKSRSNKEDPEH
Intron Amino Acid Position:
919

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
74.6
0.55
0.9
72.7
32
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
51.4
0.02
1.9
65.76
40.9

Associated Gene:

Gene:
TAF4B
Ensembl Gene ID:
ENSAPLG00000003724
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037627
115483663 - 115553709
70047
ENSAPLT00000003829
115483663 - 115553709
70047