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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_115514496_115517178_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
115514496 - 115517178
Intron Length:
2683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TACTACTAAAAC
Flanking Amino Acid:
EALQKKILNIGKRHDIMELN
Intron Amino Acid Position:
833

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
0.9
72.2
32.1
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
77.8
0.63
0.8
72
32.6
Minor 5ss
28.5
-2.5
2.7
29.8
36.4
Minor BPS
49.3
-0
1.9
61.88
42.9

Associated Gene:

Gene:
TAF4B
Ensembl Gene ID:
ENSAPLG00000003724
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037627
115483663 - 115553709
70047
ENSAPLT00000020631
115483663 - 115553709
70047
ENSAPLT00000003829
115483663 - 115553709
70047