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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_115528397_115531040_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115528397 - 115531040
Intron Length:
2644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTG
Flanking Amino Acid:
PQPYLVPFLKKSMLALRQLM
Intron Amino Acid Position:
505

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97
1.11
0.7
88.7
23.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
81.2
0.7
0.8
73.5
37.1
Minor 5ss
37.2
-1.4
3.3
52
45.2
Minor BPS
68.9
0.45
1.6
74.56
38.3

Associated Gene:

Gene:
TAF4B
Ensembl Gene ID:
ENSAPLG00000003724
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020631
115483663 - 115553709
70047
ENSAPLT00000003829
115483663 - 115553709
70047
ENSAPLT00000037627
115483663 - 115553709
70047