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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_115533349_115537679_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115533349 - 115537679
Intron Length:
4331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTAGC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTGCGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTCTCTTTATTT
Flanking Amino Acid:
STVQPPAVIQEMLENVKKCK
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
1
76.2
39.9
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
65.2
0.34
1
59.2
42.3
Minor 5ss
34.7
-1.7
3
45.3
42.8
Minor BPS
69.4
0.69
1.5
83.14
39

Associated Gene:

Gene:
TAF4B
Ensembl Gene ID:
ENSAPLG00000003724
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037627
115483663 - 115553709
70047