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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_115533619_115537679_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115533619 - 115537679
Intron Length:
4061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTATTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTGGTTTAAAA
Flanking Amino Acid:
STVQPPAVIQPAAATASVTT
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
1
76.2
39.9
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
90
0.9
0.7
89.5
25.9
Minor 5ss
34.7
-1.7
3
45.3
42.8
Minor BPS
56.3
0.19
2
71.99
40.5

Associated Gene:

Gene:
TAF4B
Ensembl Gene ID:
ENSAPLG00000003724
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020631
115483663 - 115553709
70047
ENSAPLT00000003829
115483663 - 115553709
70047