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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_115537788_115538534_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115537788 - 115538534
Intron Length:
747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTGT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATGTGCATAATT
Flanking Amino Acid:
TPTVRICAVQNSGTQLLKKA
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.8
39.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.8
0.65
1
83.3
31.3
Minor 5ss
37.8
-1.4
3.5
55.9
48.3
Minor BPS
54.1
0.21
2
75.13
41.9

Associated Gene:

Gene:
TAF4B
Ensembl Gene ID:
ENSAPLG00000003724
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037627
115483663 - 115553709
70047
ENSAPLT00000020631
115483663 - 115553709
70047
ENSAPLT00000003829
115483663 - 115553709
70047