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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_115581793_115593738_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115581793 - 115593738
Intron Length:
11946

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TGTCTCCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTAAA
U12 Branch Point Sequence:
TTTGACTAAACT
Flanking Amino Acid:
NQNMQSLLPAPPTQNMPMGP
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.9
39.9
Major BPS
59.8
0.24
1.2
61.9
33.9
Major PPT
84.4
0.77
0.8
81.3
30.7
Minor 5ss
41.5
-0.9
2.8
57.1
41.1
Minor BPS
62.2
0.46
2
84.76
41.8

Associated Gene:

Gene:
SS18
Ensembl Gene ID:
ENSAPLG00000003628
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042237
115579804 - 115701478
121675
ENSAPLT00000020434
115579659 - 115616585
36927
ENSAPLT00000003726
115579804 - 115701478
121675