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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_115599429_115607898_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
115599429 - 115607898
Intron Length:
8470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
TTTTGTTTTACA
Flanking Amino Acid:
RPNMNMQPNQGPMMHQQPPS
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.4
32.7
Major BPS
71.6
0.54
1
72
33.1
Major PPT
92.5
0.96
0.7
87.5
30
Minor 5ss
32
-2.1
3.1
39.6
46.4
Minor BPS
61.2
0.34
2.1
78.96
37.6

Associated Gene:

Gene:
SS18
Ensembl Gene ID:
ENSAPLG00000003628
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020434
115579659 - 115616585
36927
ENSAPLT00000003726
115579804 - 115701478
121675
ENSAPLT00000042237
115579804 - 115701478
121675