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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_115608067_115608759_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
115608067 - 115608759
Intron Length:
693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGACTT
5'SS Class:
strong_major
3'SS Sequence:
TGTGGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TACGTATTGACT
Flanking Amino Acid:
QIPPYRPPQQGPPQQYSGQE
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
75.5
40.6
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
80.5
0.69
0.9
76.9
42.1
Minor 5ss
36.5
-1.5
3.6
56
48.1
Minor BPS
50.8
0.11
1.7
68.39
42.6

Associated Gene:

Gene:
SS18
Ensembl Gene ID:
ENSAPLG00000003628
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003726
115579804 - 115701478
121675
ENSAPLT00000042237
115579804 - 115701478
121675
ENSAPLT00000020434
115579659 - 115616585
36927