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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_115614274_115616383_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115614274 - 115616383
Intron Length:
2110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTCCCT
5'SS Class:
major
3'SS Sequence:
ATTTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATGTTTTGAATT
Flanking Amino Acid:
PQQRPYGYDQGQYGNYQQ*
Intron Amino Acid Position:
411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
60.8
43.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
87
0.83
0.7
85.9
27.9
Minor 5ss
46.7
-0.3
2.8
66.6
44.2
Minor BPS
61.8
0.45
1.4
74.34
37.1

Associated Gene:

Gene:
SS18
Ensembl Gene ID:
ENSAPLG00000003628
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020434
115579659 - 115616585
36927