About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_115614274_115701208_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115614274 - 115701208
Intron Length:
86935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTCCCT
5'SS Class:
major
3'SS Sequence:
GCTCTTATTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTCCCCACAATA
Flanking Amino Acid:
PQQRPYGYDQCWKWVQQERE
Intron Amino Acid Position:
411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
60.8
43.6
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
79.3
0.66
0.9
72.6
36.3
Minor 5ss
46.7
-0.3
2.8
66.6
44.2
Minor BPS
50.7
0.02
1.8
66.29
40.1

Associated Gene:

Gene:
SS18
Ensembl Gene ID:
ENSAPLG00000003628
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042237
115579804 - 115701478
121675
ENSAPLT00000003726
115579804 - 115701478
121675