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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_115789789_115803391_R

Intron Information:

Intron Rank:
137380
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
115789789 - 115803391
Intron Length:
13603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCAAAATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TCCTCCTCAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
73
31.2
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
59.6
0.22
0.9
55.6
32.6
Minor 5ss
35.8
-1.6
3.3
46.4
48.9
Minor BPS
61.4
0.35
1.7
68.84
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021407
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043928
115789622 - 115805146
15525
ENSAPLT00000030855
115789638 - 115807978
18341