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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_115796975_115803391_R

Intron Information:

Intron Rank:
137382
Intron Class:
major
Intron Phase:
Intron Coordinates:
115796975 - 115803391
Intron Length:
6417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGTCTTTTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
73
31.2
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
88.8
0.87
0.7
83.9
31
Minor 5ss
35.8
-1.6
3.3
46.4
48.9
Minor BPS
72.3
0.68
1.2
76.15
33.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021407
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033300
115796796 - 115805146
8351