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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_115803455_115805042_R

Intron Information:

Intron Rank:
137383
Intron Class:
major
Intron Phase:
Intron Coordinates:
115803455 - 115805042
Intron Length:
1588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGGTA
5'SS Class:
major
3'SS Sequence:
ATTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.1
67.7
37.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.1
0.95
0.7
85.1
34.9
Minor 5ss
39
-1.2
3.6
55.3
48.9
Minor BPS
62.5
0.47
1.8
84.55
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021407
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043928
115789622 - 115805146
15525
ENSAPLT00000033300
115796796 - 115805146
8351