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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_115816199_115829504_R

Intron Information:

Intron Rank:
137650
Intron Class:
major
Intron Phase:
Intron Coordinates:
115816199 - 115829504
Intron Length:
13306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCCGTAGG
5'SS Class:
major
3'SS Sequence:
TTCTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
CTTTCCTGAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.3
63.8
47.8
Major BPS
69.6
0.49
1
59.5
39
Major PPT
88.7
0.87
0.6
88.9
20.4
Minor 5ss
29.5
-2.4
2.7
34.5
41
Minor BPS
70.3
0.5
1.5
72.16
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021553
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047283
115808351 - 115830053
21703