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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_115884618_115885648_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
115884618 - 115885648
Intron Length:
1031

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTTGTG
5'SS Class:
major
3'SS Sequence:
TTTTTTCTGACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAC
U12 Branch Point Sequence:
TTTTGTTTACCT
Flanking Amino Acid:
KPWGWRRRKRVEENETEDQQ
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
69.2
41.7
Major BPS
71.4
0.53
1.1
63.4
44
Major PPT
86.4
0.82
0.9
84.2
30.9
Minor 5ss
35.3
-1.7
3.5
49.3
46.9
Minor BPS
64.1
0.52
2
87.23
39

Associated Gene:

Gene:
ZNF521
Ensembl Gene ID:
ENSAPLG00000003518
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018912
115884494 - 116098276
213783